Spinocerebellar Ataxia with Axonal Neuropathy

National Organization for Rare Disorders, Inc.

Skip to the navigation


It is possible that the main title of the report Spinocerebellar Ataxia with Axonal Neuropathy is not the name you expected. Please check the synonyms listing to find the alternate name(s) and disorder subdivision(s) covered by this report.


  • SCAN1

Disorder Subdivisions

  • None

General Discussion

Spinocerebellar ataxia with axonal neuropathy (SCAN1) is a neurodegenerative disorder that is inherited in an autosomal recessive pattern. SCAN1 is characterized by late childhood-onset of a slowly progressive cerebellar ataxia, followed by areflexia and signs of peripheral neuropathy. Gaze nystagmus and cerebellar dysarthria usually develop after the onset of ataxic gait. As the disease advances, pain and touch sensation become impaired in the hands and legs; vibration sense disappears in hands and lower thigh. Individuals with advanced disease develop a steppage gait and pes cavus; and later become wheelchair dependent. Affected individuals have normal intellect and longevity.


SCAN1 is suspected in individuals with the following clinical features:

- Cerebellar ataxia and areflexia of late childhood (13 - 15 years)-onset followed by signs of peripheral neuropathy

- Slow progression

- Absence of oculomotor apraxia

- Absence of extra-neurological findings common in ataxia-telangiectasia (telangiectasias, immunodeficiency and cancer predisposition)

- Family history consistent with autosomal recessive inheritance

- MRI: Cerebellar atrophy especially of the vermis is present in all affected individuals

- Nerve conduction studies: Signs of axonal neuropathy

- Nerve biopsy: axonal loss

- Blood tests: Decreased serum concentration of albumin and increased serum concentration of cholesterol


SCAN1 is inherited as an autosomal recessive disorder. Recessive genetic disorders occur when an individual inherits two copies of an abnormal gene for the same trait, one from each parent. If an individual receives one normal gene and one gene for the disease, the person will be a carrier for the disease but usually will not show symptoms. The risk for two carrier parents to both pass the defective gene and have an affected child is 25% with each pregnancy. The risk to have a child who is a carrier like the parents is 50% with each pregnancy. The chance for a child to receive normal genes from both parents and be genetically normal for that particular trait is 25%. The risk is the same for males and females.

All individuals carry 4-5 abnormal genes. Parents who are close relatives (consanguineous) have a higher chance than unrelated parents to both carry the same abnormal gene, which increases the risk to have children with a recessive genetic disorder.

Biallelic mutations in the tyrosyl-DNA phosphodiesterase 1 (TDP1) gene are found in all individuals with SCAN1. The TDP1 gene encodes tyrosyl-DNA phosphodiesterase 1 (Tdp1) a DNA repair enzyme that is involved in correction of the DNA strand breaks in which the 3' end is blocked by stalled topoisomerase I or phosphoglycolate. The histidine at amino acid residue 493 (His493) is a key residue in the active site of Tdp1 and its mutation impairs enzymatic activity. In particular, the p.His493Arg mutation identified in SCAN1 reduces enzymatic activity 25-fold and results in accumulation of topoisomerase I DNA complexes. Also, the mutant Tdp1 forms a prolonged covalent intermediate with the DNA.

Consistent with these in vitro studies, lymphoblastoid cells from persons with SCAN1 are more sensitive to the camptothecins and radiation. Despite these findings, SCAN1 does not appear to arise solely from deficient functional Tdp1 because Tdp1-deficient mice have normal growth and survival under ideal growth conditions although they are highly sensitive to the camptothecins and bleomycin. This suggests that, at least in mice and yeast, redundant pathways exist for Tdp1 and that this redundancy is sufficient under ideal conditions.

Further analysis suggests that the pathology of SCAN1 can be partially attributed to the prolonged covalent intermediate state formed by the p.His493Arg Tdp1 because murine and yeast cells expressing the ortholog of the human p.His493Arg Tdp1 are more sensitive to DNA damaging agents than are Tdp1-deficientl cells. This latter observation would also provide an explanation for the rarity of SCAN1 because recurrence of the disease would require recurrence of the p.His493Arg mutation or a functionally equivalent mutation. The autosomal recessive inheritance of a neomorphic mutation is explained by the finding that the covalent intermediate formed by p.His493Arg Tdp1 is rapidly repaired by wild type Tdp1.

Affected Populations

SCAN1 has been identified in a single Saudi Arabian family. It has not been identified in other ataxic individuals.

Standard Therapies


The diagnosis of SCAN1 is made on history and clinical signs as listed above. DNA testing for mutations in TDP1 is only available on a research basis.


Treatments are selected to address individual symptoms as they develop. Prostheses, walking aids, and wheelchairs are helpful for mobility depending on disabilities. Physical therapy may be helpful to maintain a more active lifestyle. Based on the proposed mechanism of disease, decreasing the predisposition of topoisomerase I to become trapped on the DNA might slow the progression of disease. Since oxidative damage of DNA is one factor that increases the amount of topoisomerase I stalled on the DNA, antioxidants may prove efficacious in affected individuals although this therapy has not been tried yet.

Investigational Therapies

Information on current clinical trials is posted on the Internet at www.clinicaltrials.gov. All studies receiving U.S. government funding, and some supported by private industry, are posted on this government web site.

For information about clinical trials being conducted at the NIH Clinical Center in Bethesda, MD, contact the NIH Patient Recruitment Office:

Tollfree: (800) 411-1222

TTY: (866) 411-1010

Email: prpl@cc.nih.gov

For information about clinical trials sponsored by private sources, contact:




Anheim M, Monga B, Fleury M, Charles P, Barbot C, Salih M, et al. Ataxia with oculomotor apraxia type 2: clinical, biological and genotype/phenotype correlation study of a cohort of 90 patients. Brain. 2009;132(Pt 10):2688-98.

He, X., R. C. van Waardenburg, et al). Mutation of a Conserved Active Site Residue Converts Tyrosyl-DNA Phosphodiesterase I into a DNA Topoisomerase I-dependent Poison. J Mol Biol 2007;372(4): 1070-81.

El-Khamisy, S. F., E. Hartsuiker, et al. TDP1 facilitates repair of ionizing radiation-induced DNA single-strand breaks. DNA Repair (Amst) 2007;6(10): 1485-95.

Hirano, R., H. Interthal, et al. Spinocerebellar ataxia with axonal neuropathy: consequence of a Tdp1 recessive neomorphic mutation? EMBO J 2007;26(22):4732-43.

Katyal, S., S. F. el-Khamisy, et al. TDP1 facilitates chromosomal single-strand break repair in neurons and is neuroprotective in vivo. EMBO J 2007;26(22): 4720-31.

Miao, Z. H., K. Agama, et al. Hereditary ataxia SCAN1 cells are defective for the repair of transcription-dependent topoisomerase I cleavage complexes. DNA Repair (Amst) 2006;5(12): 1489-94.

Asaka, T., H. Yokoji, et al. Autosomal recessive ataxia with peripheral neuropathy and elevated AFP: novel mutations in SETX. Neurology 2006;66(10): 1580-1.

Bhidayasiri, R., S. L. Perlman, et al. Late-onset Friedreich ataxia: phenotypic analysis, magnetic resonance imaging findings, and review of the literature. Arch Neurol 2005;62(12): 1865-9.

El-Khamisy, S. F., G. M. Saifi, et al. Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1. Nature 434(7029) 2005;108-13.

Interthal, H., H. J. Chen, et al. Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages. J Biol Chem 2005;280(43): 36518-28.

Interthal, H., H. J. Chen, et al. SCAN1 mutant Tdp1 accumulates the enzyme-DNA intermediate and causes camptothecin hypersensitivity. Embo J 2005;24(12): 2224-33.

Moreira, M. C., S. Klur, et al. Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2. Nat Genet 2004;36(3): 225-7.

Pommier, Y. Camptothecins and topoisomerase I: a foot in the door. Targeting the genome beyond topoisomerase I with camptothecins and novel anticancer drugs: importance of DNA replication, repair and cell cycle checkpoints. Curr Med Chem Anti-Canc Agents 2004;4(5): 429-34.

Plo, I., Z. Y. Liao, et al. Association of XRCC1 and tyrosyl DNA phosphodiesterase (Tdp1) for the repair of topoisomerase I-mediated DNA lesions. DNA Repair (Amst) 2003;2(10): 1087-100.

Davies, D. R., H. Interthal, et al. The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. Structure (Camb) 2002;10(2): 237-48.

Shimazaki, H., Y. Takiyama, et al.Early-onset ataxia with ocular motor apraxia and hypoalbuminemia: the aprataxin gene mutations. Neurology 2002;59(4): 590-5.

Takashima, H., C. F. Boerkoel, et al. Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. Nat Genet 2002; 32(2): 267-72.


Hirano, R, Salih, MAM, Takashima, H, and V Boerkoel, CF, (Posted October 22, 2007). Spinocerebellar Ataxia with Axonal Neuropathy, Autosomal Recessive. In: GeneReviews at GeneTests: Medical Genetics Information Resource (database online). Copyright, University of Washington, Seattle. 1997-2012. Available at: http://www.genetests.org. Accesssed on:January 16, 2012.

McKusick, VA, ed. Online Mendelian Inheritance in Man (OMIM); http://omim.org/entry/607250 Last updated: 2/2/06. Accessed on:January 16, 2012.


National Ataxia Foundation

2600 Fernbrook Lane Suite 119

Minneapolis, MN 55447


Tel: (763)553-0020

Fax: (763)553-0167

Email: naf@ataxia.org

Internet: http://www.ataxia.org

Canadian Association for Familial Ataxias - Claude St-Jean Foundation

3800 Radisson Street Office 110


Quebec, H1M 1X6


Tel: 5143218684

Tel: 8553218684

Email: ataxie@lacaf.org

Internet: http://www.lacaf.org

International Network of Ataxia Friends

2141 Palerme


Quebec, H7K 3R7


Tel: 4506633664

Email: internaf-owner@yahoogroups.com

Internet: http://internaf.org

Genetic and Rare Diseases (GARD) Information Center

PO Box 8126

Gaithersburg, MD 20898-8126

Tel: (301)251-4925

Fax: (301)251-4911

Tel: (888)205-2311

TDD: (888)205-3223

Internet: http://rarediseases.info.nih.gov/GARD/

For a Complete Report

This is an abstract of a report from the National Organization for Rare Disorders, Inc.® (NORD). Cigna members can access the complete report by logging into myCigna.com. For non-Cigna members, a copy of the complete report can be obtained for a small fee by visiting the NORD website. The complete report contains additional information including symptoms, causes, affected population, related disorders, standard and investigational treatments (if available), and references from medical literature. For a full-text version of this topic, see http://www.rarediseases.org/search/rdblist.html.